PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G138300.3
Common NameB456_013G138300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 227aa    MW: 24595.4 Da    PI: 8.0445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G138300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.7e-06195220630
                         HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                         +++Er RR ri +++ +L+el+P+ +
  Gorai.013G138300.3 195 SIAERVRRTRISDRIRKLQELVPNmD 220
                         689********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.89189226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-6192221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-5193224No hitNo description
Gene3DG3DSA:4.10.280.104.5E-5194221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MKPTPGGSSS SSGGGAEGSR AGLARFRSAP ATWLEALLEE EEEDPLKPSQ CLTQLLTGNS  60
TSTPTIRNSL LFPNSAYPSG LFEPSGFQRQ NSSPADFPGN NPAASSDAYF SNFGVVANYD  120
YLSPTMDVSP SSKRASELDT QFPPTKFHSQ LKGEPSDQIS GGISNLIDVD MEKLLEDSVP  180
CRVRAKRGCA THPRSIAERV RRTRISDRIR KLQELVPNMD KIKRYP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465077.11e-162PREDICTED: transcription factor bHLH81-like
SwissprotQ9C8P81e-74BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0D2V8G31e-166A0A0D2V8G3_G
STRINGBra036760.1-P1e-80(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.18e-64bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]